[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 650 items for (author: chai & p)

EMDB-37850:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37853:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37862:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37863:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wu4:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuc:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuw:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wux:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8qox:
Two-component assembly of SlaA and SlaB S-layer proteins of Sulfolobus acidocaldarius
Method: subtomogram averaging / : Gambelli L, McLaren M, Isupov M, Conners R, Daum B

PDB-8qp0:
A hexamer pore in the S-layer of Sulfolobus acidocaldarius formed by SlaA protein
Method: subtomogram averaging / : Gambelli L, McLaren M, Isupov M, Conners R, Daum B

EMDB-40603:
GPR161 Gs heterotrimer
Method: single particle / : Hoppe N, Manglik A, Harrison S

PDB-8smv:
GPR161 Gs heterotrimer
Method: single particle / : Hoppe N, Manglik A, Harrison S

EMDB-18127:
S-layer of archaeon Sulfolobus acidocaldarius by subtomogram averaging
Method: subtomogram averaging / : Gambelli L, McLaren MJ, Daum B

EMDB-38214:
The structure of ASFV A137R
Method: single particle / : Li C, Song H, Gao GF

PDB-8xb8:
The structure of ASFV A137R
Method: single particle / : Li C, Song H, Gao GF

EMDB-37006:
Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with golden hamster ACE2 (local refinement)
Method: single particle / : Niu S, Zhao ZN, Chai Y, Gao GF

EMDB-37090:
Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement)
Method: single particle / : Niu S, Zhao ZN, Chai Y, Gao GF

PDB-8ka8:
Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with golden hamster ACE2 (local refinement)
Method: single particle / : Niu S, Zhao ZN, Chai Y, Gao GF

PDB-8kc2:
Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement)
Method: single particle / : Niu S, Zhao ZN, Chai Y, Gao GF

EMDB-34928:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

EMDB-34940:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4 S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

EMDB-34945:
Cryo-EM structure of SARS-CoV-2 Omicron Prototype S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hp9:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hpq:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4 S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hpv:
Cryo-EM structure of SARS-CoV-2 Omicron Prototype S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

EMDB-41048:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

PDB-8t5c:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

EMDB-19035:
Composite map of the Emiliania huxleyi virus 201 (EhV-201) symmetry expanded from cryo-EM structure of virion vertex 120 nm in diameter.
Method: subtomogram averaging / : Homola M, Buttner CR, Fuzik T, Novacek J, Chaillet M, Forster F, Plevka P

EMDB-19036:
Cryo-EM structure of the Emiliania huxleyi virus 201 (EhV-201) virion vertex with a diameter of 50 nm and a mask applied on the capsid layer.
Method: subtomogram averaging / : Homola M, Buttner CR, Fuzik T, Novacek J, Chaillet M, Forster F, Plevka P

PDB-8rbs:
Emiliania huxleyi virus 201 (EhV-201) asymmetrical unit of capsid proteins predicted by AlphaFold2 fitted into the cryo-EM density of EhV-201 virion composite map.
Method: subtomogram averaging / : Homola M, Buttner CR, Fuzik T, Novacek J, Chaillet M, Forster F, Plevka P

PDB-8rbt:
Emiliania huxleyi virus 201 (EhV-201) capsid proteins predicted by AlphaFold2 fitted into a cryo-EM density map of the EhV-201 virion capsid.
Method: subtomogram averaging / : Homola M, Buttner CR, Fuzik T, Novacek J, Chaillet M, Forster F, Plevka P

EMDB-34931:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Lin S

EMDB-34944:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4 RBD in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

EMDB-34946:
Cryo-EM structure of SARS-CoV-2 Omicron Prototype RBD in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hpf:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hpu:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4 RBD in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hq7:
Cryo-EM structure of SARS-CoV-2 Omicron Prototype RBD in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

EMDB-35063:
The complex structure of Omicron BA.4 RBD with BD604, S309, and S304
Method: single particle / : He QW, Xu ZP, Xie YF

EMDB-35064:
SARS-CoV-2 Omicron BA.2 RBD complexed with BD-604 and S304 Fab
Method: single particle / : He QW, Xie Y

PDB-8hws:
The complex structure of Omicron BA.4 RBD with BD604, S309, and S304
Method: single particle / : He QW, Xu ZP, Xie YF

PDB-8hwt:
SARS-CoV-2 Omicron BA.2 RBD complexed with BD-604 and S304 Fab
Method: single particle / : He QW, Xie Y

EMDB-40699:
SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate
Method: single particle / : Small GI, Darst SA, Campbell EA

EMDB-40707:
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9, as a noncatalytic RNA-nsp9 binding mode
Method: single particle / : Small GI, Darst SA, Campbell EA

EMDB-40708:
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9 and GDP-betaS, as a pre-catalytic deRNAylation/mRNA capping intermediate
Method: single particle / : Small GI, Darst SA, Campbell EA

PDB-8sq9:
SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate
Method: single particle / : Small GI, Darst SA, Campbell EA

PDB-8sqj:
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9, as a noncatalytic RNA-nsp9 binding mode
Method: single particle / : Small GI, Darst SA, Campbell EA

PDB-8sqk:
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9 and GDP-betaS, as a pre-catalytic deRNAylation/mRNA capping intermediate
Method: single particle / : Small GI, Darst SA, Campbell EA

EMDB-41167:
GMPCPP-microtubule C1 reconstruction
Method: helical / : Lyu W, Duan D, Chai P

EMDB-41169:
GMPCPP-microtubule decorated with Abl2-557-1090
Method: helical / : Lyu W, Duan D, Chai P

EMDB-41170:
Protofilament reconstruction of microtubule decorated with Abl2-557-1090 (consensus map)
Method: helical / : Lyu W, Duan D, Chai P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more